Learn/Tier I · Foundations/ Sterile technique

Sterile technique

Every experiment in biology rests on one skill: keeping unwanted microbes out. Master this first and half of all "why did it fail?" problems disappear.

Difficulty Beginner Read time ~20 min Tier I · Foundations Cost Low

The air, your skin, and every surface around you carry microorganisms. When you culture cells, you're offering those hitchhikers a warm, nutrient-rich home too. Sterile (aseptic) technique is the set of habits that keep your cultures pure — so what grows on your plate is what you put there.

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Safety first. Alcohol (ethanol/isopropanol) is flammable. If you use an open flame, never spray alcohol near it, keep the bottle capped and away from the flame, and work in a ventilated space. If you're unsure about flames, use a still-air box instead — it's just as effective for beginners and far safer.

What you'll need

  • 70% ethanol or isopropanol (in a spray bottle)
  • Nitrile gloves
  • Paper towels
  • A clean, clutter-free bench or table
  • A still-air box or a small flame (alcohol lamp / burner)
  • Your sterile consumables (plates, loops, tubes), still sealed

Why 70% and not 100%? A little water helps alcohol penetrate and denature microbial proteins — 70% actually disinfects better than pure alcohol.

The protocol

  1. Clear and wipe the bench

    Remove everything you don't need. Spray the surface with 70% alcohol and wipe outward from the center with a paper towel. Let it air-dry — the contact time is what disinfects.

  2. Glove up and disinfect your gloves

    Put on nitrile gloves, then spray or wipe them with alcohol too. Re-disinfect any time you touch your face, phone, or a non-sterile surface.

  3. Set up your sterile zone

    Work inside a still-air box, or within the rising warm air near a flame (the "sterile cone"). Arrange items so you never have to reach over an open plate or tube.

  4. Open containers for the shortest time possible

    Lift a petri dish lid only partway, like a clamshell, and only while you're actively working. Keep tubes angled and capped until the moment you need them.

  5. Flame or replace your tools between uses

    Pass a metal inoculation loop through a flame until it glows, then let it cool for a few seconds before touching cells. With single-use plastic loops, take a fresh sterile one each time.

  6. Never touch sterile surfaces

    Don't let the mouth of a tube, the inside of a lid, or the tip of a pipette touch your fingers, the bench, or the air any longer than necessary. When in doubt, discard and start with a fresh sterile item.

  7. Close up and clean down

    Reseal everything, wipe the bench with alcohol again, and dispose of or decontaminate anything that touched live culture (see disposal, below).

The habit test: a good aseptic worker looks slow and deliberate, not fast. If you're ever thinking "that's probably fine," it usually isn't — grab a fresh sterile item. It's cheaper than a ruined experiment.

Troubleshooting

You see…Likely causeFix
Fuzzy or coloured spots (mold) on platesAirborne contaminationReduce open time; work in a still-air box; check plates aren't left ajar.
A "lawn" of unexpected growth everywhereTool or reagent not sterileFlame/replace loops each use. Confirm plates and media were properly sterilized.
Contamination only near where you reachedReaching over open containersRearrange your layout. Keep hands to the side, never above.

Disposal

Treat anything that touched live culture as biohazardous even though these organisms are harmless (BSL-1). Submerge used plates and tubes in a 10% household bleach solution for 20+ minutes, or pressure-cook/autoclave them, before binning. Wipe surfaces with alcohol when you finish.

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Practice on a real culture

The Microbiology Starter Kit is the gentlest way to build these habits — plates, loops, and a first organism to culture.

Get the kit →